IntegronFinder2: integrons identification in bacterial genome is available

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella .

Developed within the framework of IFB ABRomics project

PlasmidFinder: plasmid identification in bacterial genome is available

PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS).

Developed within the framework of IFB ABRomics project

ISEScan: insertion sequence elements detection in prokaryotic genome is available

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.

Developed within the framework of IFB ABRomics project

Bakta genome annotations is available

Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification.

Developed within the framework of IFB ABRomics project

Galaxy version

Galaxy runnning on version 22.05 since January 22th, 2024.

Please check the release notes for more informations.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.

• Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
• Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
• Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
• Scalable: Galaxy can run on anything, from a laptop, to large clusters or the cloud.

Workflow develpped at AuBi

Calculate pore diameter is a workflow to calculate and visualize the pore diameter of aquaporins (AQP) over time.
5 new tools have been added in CHEMICAL TOOLBOX Section, and a workflow is available from "Shared Data > Workflows" pannel.

Individual tools are:

• GROMACS check
  
• estimate sub_trajectories or cut trajectory
  
• calculate pore diameter of AQP
  
• concatenate lines of multi tables
  
• visualize pore diameter of AQP

Developed within the framework of the UCA Master 2 Bioinformatics; coordinated by the UMR PIAF, member of the AuBi platform